STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-Ala-D-Ala carboxypeptidase 3 (S13) family; dacB; D-alanyl-D-alanine carboxypeptidase; hypothetical protein. (436 aa)    
Predicted Functional Partners:
dacA
DacA protein; InterPro: D-alanyl-D-alanine carboxypeptidase 1 (S11) family; hypothetical protein.
     
 0.925
mccF
Microcin C7 self-immunity protein; Similar to muramoyltetrapeptide carboxypeptidase; hypothetical protein.
 
  
 0.809
Bd3243
Membrane-bound lytic murein transglycosylase, putative; InterPro: SLT domain; hypothetical protein.
 
     0.789
Bd0816
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); hypothetical protein.
  
   
 0.699
Bd3549
Rhodanese-related sulfurtransferases; InterPro: Rhodanese/cdc25 fold; hypothetical protein.
     
 0.666
Bd3460
Conserved hypothetical protein.
     
 0.664
Bd1180
Hypothetical protein predicted by Glimmer/Critica; Possible ATPases with chaperone activity, ATP-binding subunit; hypothetical protein.
      
 0.630
ycbB
Putative periplasmic protein YcbB.
      
 0.630
pykA
InterPro: Pyruvate kinase family; hypothetical protein.
      
 0.629
gst
InterPro: Glutathione S-transferase N terminus; hypothetical protein.
      
 0.628
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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