STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ggtGgt protein; InterPro: Gamma-glutamyltranspeptidase; hypothetical protein. (577 aa)    
Predicted Functional Partners:
Bd2263
Conserved hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
  
 0.939
pepA-2
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
  
 0.929
pepA
InterPro: Cytosol aminopeptidase; hypothetical protein.
  
  
 0.928
btuE
Vitamin B12-bindingperiplasmic protein of vitamin B12 ABC transporter; hypothetical protein; Belongs to the glutathione peroxidase family.
     
 0.912
bsaA
InterPro: Glutathione peroxidase; hypothetical protein.
     
 0.912
bsaA-2
InterPro: Glutathione peroxidase; hypothetical protein.
     
 0.912
gst
InterPro: Glutathione S-transferase N terminus; hypothetical protein.
     
 0.910
gst-2
Gst protein; InterPro: Glutathione S-transferase C terminus; hypothetical protein; Belongs to the GST superfamily.
     
 0.910
pepN
PepN protein; InterPro: Aminopeptidase N APN (CD13); hypothetical protein.
     
 0.905
Bd1350
Conserved hypothetical protein.
     
 0.903
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.