STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metBCystathionine gamma-lyase; InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; hypothetical protein. (387 aa)    
Predicted Functional Partners:
Bd3796
Cystathionine beta-synthase; InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family; hypothetical protein.
 0.995
cysM
CysM protein; InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family; hypothetical protein.
 0.977
Bd1710
PALP domain-containing protein; Unnamed protein product; InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family; hypothetical protein.
 
 0.972
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 
 0.942
aspC
Aspartate aminotransferase.
  
 
 0.937
sseA
InterPro: Rhodanese/cdc25 fold, Putative thiosulfate sulfurtransferase SSEA; hypothetical protein.
  
 
 0.925
ilvE
InterPro: Aminotransferases class-IV, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; hypothetical protein.
   
 0.919
Bd1386
Cys/Met metabolism lyase (PLP-dependent).
  
  
 
0.916
trxB
Thioredoxin reductase; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein.
   
 
 0.912
cysE
Serine acetyltransferase; InterPro: Bacterial transferase hexapeptide repeat; hypothetical protein.
  
 
 0.896
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.