STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOH55589.1D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (388 aa)    
Predicted Functional Partners:
AOH55569.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.927
AOH52763.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 
0.921
AOH53769.1
Penicillin-binding protein.
  
 
 0.918
AOH55475.1
Penicillin-binding protein.
  
 
 0.918
AOH53205.1
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
     
 0.914
AOH56121.1
Peptidoglycan glycosyltransferase.
  
 
 0.914
AOH53050.1
Penicillin binding protein PBP4B.
     
 0.908
AOH54410.1
Hypothetical protein.
    
 0.908
AOH57047.1
Peptidase M15.
    
 0.908
AOH55586.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
     0.736
Your Current Organism:
Bacillus muralis
NCBI taxonomy Id: 264697
Other names: B. muralis, Bacillus fresconis, Bacillus muralis Heyrman et al. 2005, Bacillus sp. LMG 20238, DSM 16288, LMG 20238, LMG:20238
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.