Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PRU_0001 | PRU_0002 | PRU_0001 | PRU_0002 | Adhesin-like protein; Identified by similarity to SP:Q03155. | Hypothetical protein; Identified by glimmer; putative. | 0.463 |
PRU_0001 | PRU_0515 | PRU_0001 | PRU_0515 | Adhesin-like protein; Identified by similarity to SP:Q03155. | Peptidase, C13 family; Identified by match to protein family HMM PF01650. | 0.564 |
PRU_0001 | PRU_1476 | PRU_0001 | PRU_1476 | Adhesin-like protein; Identified by similarity to SP:Q03155. | Peptidase, C13 (legumain) family; Identified by match to protein family HMM PF01650. | 0.468 |
PRU_0001 | PRU_1829 | PRU_0001 | PRU_1829 | Adhesin-like protein; Identified by similarity to SP:Q03155. | Conserved hypothetical protein; Identified by similarity to GB:AAO76681.1. | 0.672 |
PRU_0001 | carB | PRU_0001 | PRU_0889 | Adhesin-like protein; Identified by similarity to SP:Q03155. | Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM PF08443; match to protein family HMM TIGR01369. | 0.902 |
PRU_0001 | nifJ | PRU_0001 | PRU_1235 | Adhesin-like protein; Identified by similarity to SP:Q03155. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by similarity to GB:CAA70873.1; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176. | 0.423 |
PRU_0002 | PRU_0001 | PRU_0002 | PRU_0001 | Hypothetical protein; Identified by glimmer; putative. | Adhesin-like protein; Identified by similarity to SP:Q03155. | 0.463 |
PRU_0515 | PRU_0001 | PRU_0515 | PRU_0001 | Peptidase, C13 family; Identified by match to protein family HMM PF01650. | Adhesin-like protein; Identified by similarity to SP:Q03155. | 0.564 |
PRU_1476 | PRU_0001 | PRU_1476 | PRU_0001 | Peptidase, C13 (legumain) family; Identified by match to protein family HMM PF01650. | Adhesin-like protein; Identified by similarity to SP:Q03155. | 0.468 |
PRU_1829 | PRU_0001 | PRU_1829 | PRU_0001 | Conserved hypothetical protein; Identified by similarity to GB:AAO76681.1. | Adhesin-like protein; Identified by similarity to SP:Q03155. | 0.672 |
carB | PRU_0001 | PRU_0889 | PRU_0001 | Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM PF08443; match to protein family HMM TIGR01369. | Adhesin-like protein; Identified by similarity to SP:Q03155. | 0.902 |
nifJ | PRU_0001 | PRU_1235 | PRU_0001 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by similarity to GB:CAA70873.1; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176. | Adhesin-like protein; Identified by similarity to SP:Q03155. | 0.423 |