STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0091Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF01697. (317 aa)    
Predicted Functional Partners:
PRU_0090
Identified by similarity to SP:O32273; match to protein family HMM PF01943.
  
  
 0.812
PRU_0094
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.804
PRU_0087
Hemolysin erythrocyte lysis protein 2; Identified by similarity to GB:AAC05838.1; match to protein family HMM PF00155.
  
 
 0.799
PRU_0092
Lipopolysaccharide biosynthesis protein; Identified by similarity to GB:AAS55720.1; match to protein family HMM PF05523; overlaps another CDS with the same product name.
  
  
 0.783
PRU_0093
Lipopolysaccharide biosynthesis protein; Identified by similarity to GB:AAS55720.1; match to protein family HMM PF05523; overlaps another CDS with the same product name.
  
  
 0.783
PRU_0095
Glycosyltransferase, group 2 family.
  
    0.783
PRU_0089
Conserved domain protein; Identified by similarity to GB:BAB80328.1.
       0.775
PRU_0088
Octopine/opine/tauropine dehydrogenase-like protein; Identified by similarity to SP:Q44297; match to protein family HMM PF01210; match to protein family HMM PF02317.
       0.773
PRU_0097
Conserved hypothetical protein.
 
  
 0.613
PRU_0102
Conserved hypothetical protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF07993.
  
  
 0.594
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.