STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0097Conserved hypothetical protein. (369 aa)    
Predicted Functional Partners:
PRU_0096
Putative acetyl transferase; Identified by similarity to GB:CAA11147.1; match to protein family HMM PF00132.
 
     0.825
PRU_0098
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
  
 0.791
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
    0.709
PRU_0102
Conserved hypothetical protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF07993.
     
 0.659
PRU_0101
Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM PF08485.
  
  
 0.651
PRU_0099
Putative O-antigen polymerase; Identified by similarity to GB:AAK64372.1.
       0.635
PRU_0100
Conserved hypothetical protein; Identified by similarity to GB:AAT28925.1; match to protein family HMM PF00534.
  
  
 0.620
PRU_0091
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF01697.
 
  
 0.613
PRU_0104
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
  
 0.593
PRU_0103
UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
    0.592
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.