Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0107Conserved domain protein; Identified by similarity to GB:BAD49541.1. (375 aa)    
Predicted Functional Partners:
PRU_1651
MFS transporter; Identified by match to protein family HMM PF07690.
  
     0.696
PRU_0814
Conserved domain protein; Identified by similarity to GB:AAQ66446.1; match to protein family HMM PF07719.
  
    0.659
PRU_0299
Conserved hypothetical protein; Identified by similarity to GB:AAO78911.1.
  
     0.642
PRU_2904
Putative membrane protein; Identified by similarity to GB:AAO76859.1.
 
    0.640
PRU_2800
Putative lipoprotein; Identified by similarity to SP:P12608; match to protein family HMM PF09375.
  
     0.608
PRU_1450
Conserved hypothetical protein; Identified by similarity to GB:AAQ67102.1.
  
   
 0.570
PRU_1992
Conserved hypothetical protein; Identified by similarity to GB:AAO79085.1.
  
     0.569
PRU_0300
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
 
     0.566
PRU_0840
Conserved hypothetical protein; Identified by similarity to GB:AAQ67046.1.
 
 
 
 0.564
PRU_1642
Conserved hypothetical protein; Identified by similarity to GB:AAQ66639.1.
  
     0.558
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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