STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0144Divergent AAA domain protein; Identified by match to protein family HMM PF04326. (520 aa)    
Predicted Functional Partners:
PRU_0534
Divergent AAA domain protein; Identified by match to protein family HMM PF04326.
  
  
  0.974
PRU_1009
Divergent AAA domain protein; Identified by match to protein family HMM PF04326; match to protein family HMM PF08279.
  
  
 
0.928
PRU_1058
Divergent AAA domain protein; Identified by match to protein family HMM PF04326.
  
  
 
0.928
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
    
 0.902
PRU_1952
Hypothetical protein; Identified by glimmer; putative.
  
     0.475
PRU_1107
Type III restriction-modification system, Res subunit; Identified by match to protein family HMM PF01896; match to protein family HMM PF04851.
 
     0.452
PRU_0145
Hypothetical protein; Identified by glimmer; putative.
       0.439
PRU_2888
Conserved hypothetical protein; Identified by similarity to GB:AAO77246.1; match to protein family HMM PF06250.
 
     0.411
PRU_2822
Conserved hypothetical protein; Identified by similarity to GB:AAL29908.1; match to protein family HMM PF06250.
 
     0.410
PRU_1731
Putative RloA; Identified by similarity to GB:AAN33150.1.
 
     0.403
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.