STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0159Conserved hypothetical protein; Identified by similarity to GB:BAD47539.1. (356 aa)    
Predicted Functional Partners:
PRU_0158
Conserved hypothetical protein; Identified by similarity to GB:AAO79152.1.
       0.799
PRU_0193
Conserved hypothetical protein; Identified by similarity to GB:AAO79667.1.
  
     0.713
PRU_2866
Conserved hypothetical protein; Identified by similarity to GB:AAQ67044.1.
  
     0.710
PRU_0160
LAO/AO transport system ATPase; Identified by similarity to SP:P27254; match to protein family HMM PF03308; match to protein family HMM TIGR00750.
       0.704
PRU_2169
Conserved hypothetical protein; Identified by similarity to GB:AAO76681.1.
  
     0.678
PRU_1251
Conserved hypothetical protein; Identified by similarity to GB:AAQ67053.1.
  
     0.672
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.666
PRU_0035
Conserved hypothetical protein; Identified by similarity to GB:AAQ65615.1.
  
     0.659
PRU_1829
Conserved hypothetical protein; Identified by similarity to GB:AAO76681.1.
  
     0.637
PRU_2390
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.633
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.