STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0169Peptidase, S8A (subtilisin) family; Identified by match to protein family HMM PF00082. (439 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
  
 0.802
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.792
ilvE
Branched-chain-amino-acid transaminase; Identified by similarity to GB:AAF64593.1; match to protein family HMM PF01063; match to protein family HMM TIGR01123.
  
  
 0.660
PRU_1827
Conserved hypothetical protein; Identified by similarity to GB:AAQ65786.1.
 
 
   0.637
PRU_2690
Conserved hypothetical protein; Identified by similarity to GB:AAQ65282.1.
 
 
   0.633
PRU_2040
Conserved hypothetical protein; Identified by similarity to GB:AAQ65968.1.
 
 
 0.586
PRU_0170
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
    0.551
PRU_0177
Conserved hypothetical protein; Identified by similarity to GB:AAM36557.1.
 
     0.551
PRU_0171
Conserved hypothetical protein; Identified by similarity to GB:AAO77200.1.
       0.540
PRU_0172
Phosphodiesterase, MJ0936 family subfamily; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040.
     
 0.530
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.