STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0177Conserved hypothetical protein; Identified by similarity to GB:AAM36557.1. (311 aa)    
Predicted Functional Partners:
PRU_0176
Polysaccharide glycan isomerase; Identified by similarity to GB:AAK53472.1; similarity to GB:AAS55720.1; match to protein family HMM PF05523.
 
     0.947
rfbB
dTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P37777; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181.
       0.789
PRU_0174
Hypothetical protein; Identified by glimmer; putative.
       0.789
purT
Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
       0.789
PRU_0170
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
       0.765
PRU_0171
Conserved hypothetical protein; Identified by similarity to GB:AAO77200.1.
       0.765
PRU_0172
Phosphodiesterase, MJ0936 family subfamily; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040.
       0.765
PRU_0093
Lipopolysaccharide biosynthesis protein; Identified by similarity to GB:AAS55720.1; match to protein family HMM PF05523; overlaps another CDS with the same product name.
 
     0.730
PRU_0092
Lipopolysaccharide biosynthesis protein; Identified by similarity to GB:AAS55720.1; match to protein family HMM PF05523; overlaps another CDS with the same product name.
 
     0.719
PRU_1517
Conserved hypothetical protein; Identified by similarity to GB:AAK60455.1.
 
     0.703
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.