Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRU_0191Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535. (318 aa)    
Predicted Functional Partners:
PRU_0192
Putative lipoprotein; Identified by similarity to GB:BAD47935.1.
  
    0.834
PRU_0190
Conserved hypothetical protein; Identified by similarity to GB:AAQ65527.1.
       0.824
PRU_0195
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
  
  
 0.635
PRU_0193
Conserved hypothetical protein; Identified by similarity to GB:AAO79667.1.
       0.633
PRU_0194
Putative thiamine biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.633
PRU_0198
Peptidase, S41A family; Identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.
 
     0.550
PRU_0197
Cytidine/deoxycytidylate deaminase zinc-binding domain protein; Identified by match to protein family HMM PF00383.
  
    0.532
PRU_0196
Putative oligopeptidase A; Identified by similarity to SP:P27298; match to protein family HMM PF01432.
       0.520
PRU_0199
Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.497
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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