STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0239Conserved hypothetical protein; Identified by similarity to GB:CAD55725.1. (181 aa)    
Predicted Functional Partners:
PRU_0240
Translocator protein, LysE family; Identified by match to protein family HMM PF01810.
 
     0.902
PRU_0905
3'-5' exonuclease; Identified by match to protein family HMM PF01612.
 
     0.739
PRU_2394
Conserved hypothetical protein; Identified by similarity to GB:AAO78837.1.
  
    0.709
PRU_2390
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.695
PRU_1233
Conserved hypothetical protein; Identified by similarity to GB:BAD50071.1.
  
     0.686
glkA
Glucokinase; Identified by similarity to SP:P40184; match to protein family HMM PF00480.
 
     0.685
PRU_0861
Conserved hypothetical protein; Identified by similarity to GB:AAO79474.1; match to protein family HMM PF06835.
  
     0.669
PRU_1870
Putative lipoprotein; Identified by similarity to GB:AAO77379.1.
  
     0.669
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
    0.648
PRU_1298
Conserved hypothetical protein; Identified by similarity to GB:AAO76438.1.
  
     0.644
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.