Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRU_0243Conserved hypothetical protein; Identified by similarity to GB:AAO79700.1. (138 aa)    
Predicted Functional Partners:
PRU_0245
Conserved hypothetical protein; Identified by similarity to GB:AAO79698.1.
 
     0.855
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.824
yajC
Preprotein translocase, YajC subunit; Identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739.
       0.824
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.824
PRU_2936
Conserved hypothetical protein; Identified by similarity to GB:BAD50833.1.
  
     0.757
PRU_2928
Conserved hypothetical protein; Identified by similarity to GB:AAO77113.1.
  
     0.753
PRU_1354
Conserved hypothetical protein; Identified by similarity to GB:AAQ66307.1.
  
     0.746
PRU_1558
Putative lipoprotein; Identified by similarity to GB:AAO79481.1.
  
     0.717
hemD
uroporphyrinogen-III synthase; Identified by match to protein family HMM PF02602.
  
     0.715
PRU_0539
Conserved hypothetical protein; Identified by similarity to GB:AAQ66077.1.
  
     0.711
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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