Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_0264Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (299 aa)    
Predicted Functional Partners:
PRU_0263
Oxidoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
  
    0.695
PRU_1503
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.618
PRU_0265
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.521
PRU_0261
Putative membrane protein.
       0.490
PRU_0262
Conserved hypothetical protein; Identified by similarity to GB:AAO78603.1; match to protein family HMM PF09359.
       0.490
PRU_0266
RND efflux transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.415
PRU_2251
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01344.
  
     0.400
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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