STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0271Conserved hypothetical protein; Identified by similarity to GB:BAB49423.1; match to protein family HMM PF07944. (774 aa)    
Predicted Functional Partners:
PRU_0418
alpha-N-arabinofuranosidase; Identified by similarity to GB:AAN05450.1; match to protein family HMM PF06964.
 
   
 0.747
PRU_2780
Glycosyl hydrolase, family 29; Identified by match to protein family HMM PF01120.
  
     0.718
PRU_0465
Glycosyl hydrolase, family 51; Identified by match to protein family HMM PF02018.
 
   
 0.640
PRU_0272
Putative receptor antigen RagA; Identified by similarity to GB:CAA10226.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.580
PRU_0525
alpha-N-arabinofuranosidase; Identified by similarity to SP:P82593; match to protein family HMM PF02018; match to protein family HMM PF06964.
 
  
 0.553
PRU_0273
Putative lipoprotein; Identified by match to protein family HMM PF07980.
       0.548
PRU_0269
Glycosyl hydrolase, family 43/DS domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF04616.
 
   
 0.502
PRU_2441
Conserved hypothetical protein; Identified by similarity to GB:AAO79515.1; match to protein family HMM PF07940.
 
     0.490
PRU_0275
Conserved domain protein; Identified by similarity to GB:AAM43445.1.
       0.469
PRU_0274
Putative lipoprotein.
       0.466
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.