Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_0285Methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242. (203 aa)    
Predicted Functional Partners:
PRU_0286
Hypothetical protein; Identified by glimmer; putative.
       0.489
idsA
Short chain isoprenyl diphosphate synthase; Identified by similarity to SP:Q53479; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 
 0.455
PRU_2484
Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 
 0.455
PRU_0287
Peptidase, M18 (aminopeptidase 1) family; Identified by similarity to SP:Q9ULA0; match to protein family HMM PF02127.
  
    0.410
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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