STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0296Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (197 aa)    
Predicted Functional Partners:
fabG
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.768
PRU_0298
RNA pseudouridine synthase family protein; Identified by match to protein family HMM PF00849.
  
    0.706
PRU_0299
Conserved hypothetical protein; Identified by similarity to GB:AAO78911.1.
 
     0.661
PRU_0300
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
     
 0.645
PRU_0993
Putative lipoprotein.
  
     0.528
PRU_1450
Conserved hypothetical protein; Identified by similarity to GB:AAQ67102.1.
 
     0.524
PRU_0589
Sporulation-like repeat protein; Identified by match to protein family HMM PF05036.
  
   
 0.519
PRU_2286
Conserved hypothetical protein; Identified by similarity to GB:CAE79375.1; match to protein family HMM PF03938.
  
    0.510
PRU_2326
Conserved hypothetical protein; Identified by similarity to GB:AAO78560.1.
  
     0.467
PRU_1441
Conserved hypothetical protein; Identified by similarity to GB:AAO75698.1.
  
    0.461
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.