Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0299Conserved hypothetical protein; Identified by similarity to GB:AAO78911.1. (1557 aa)    
Predicted Functional Partners:
PRU_0300
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
 
   
 0.953
PRU_0298
RNA pseudouridine synthase family protein; Identified by match to protein family HMM PF00849.
       0.775
PRU_0725
Conserved hypothetical protein; Identified by similarity to GB:AAO79324.1.
 
     0.764
PRU_1066
Conserved hypothetical protein; Identified by similarity to GB:AAO75916.1.
  
     0.741
PRU_1450
Conserved hypothetical protein; Identified by similarity to GB:AAQ67102.1.
 
     0.715
PRU_1339
Conserved hypothetical protein; Identified by similarity to GB:BAD48329.1.
  
     0.712
PRU_1170
Identified by match to protein family HMM PF01841.
 
     0.704
PRU_1800
Conserved hypothetical protein; Identified by similarity to GB:AAQ67031.1.
 
     0.704
PRU_0589
Sporulation-like repeat protein; Identified by match to protein family HMM PF05036.
  
     0.702
PRU_2286
Conserved hypothetical protein; Identified by similarity to GB:CAE79375.1; match to protein family HMM PF03938.
 
   
 0.692
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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