STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0300Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103. (787 aa)    
Predicted Functional Partners:
PRU_0299
Conserved hypothetical protein; Identified by similarity to GB:AAO78911.1.
 
   
 0.952
PRU_0298
RNA pseudouridine synthase family protein; Identified by match to protein family HMM PF00849.
  
    0.854
fabG
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.795
PRU_1355
Putative lipoprotein; Identified by similarity to GB:AAQ66305.1; match to protein family HMM TIGR03302.
 
 
 0.729
PRU_1474
Conserved hypothetical protein; Identified by similarity to GB:AAO75753.1.
 
 
 
 0.717
PRU_1251
Conserved hypothetical protein; Identified by similarity to GB:AAQ67053.1.
 
   
 0.712
PRU_0301
Conserved hypothetical protein; Identified by similarity to GB:AAO78913.1.
       0.700
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
 
 
 0.696
PRU_0296
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
     
 0.652
PRU_2924
Putative membrane-associated zinc metalloprotease; Identified by match to protein family HMM PF02163.
 
  
 0.625
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.