Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PRU_0359Hypothetical protein; Identified by glimmer; putative. (772 aa)    
Predicted Functional Partners:
PRU_0360
Putative restriction endonuclease; Identified by similarity to SP:P15005.
       0.824
PRU_0361
DNA methylase, C-5 cytosine-specific family; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; overlaps another CDS with the same product name.
       0.786
PRU_0362
DNA methylase, C-5 cytosine-specific family; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; overlaps another CDS with the same product name; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
       0.786
PRU_0358
DNA mismatch endonuclease Vsr family protein; Identified by similarity to SP:P09184; match to protein family HMM PF03852; match to protein family HMM TIGR00632.
       0.782
PRU_0357
ISPru1, transposase orfA; Identified by similarity to SP:Q51761; match to protein family HMM PF00665.
       0.441
PRU_0356
ISPru1, transposase orfB; Identified by similarity to SP:P55923; match to protein family HMM PF01695.
       0.423
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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