Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PRU_0372ATPase, AAA family; Identified by match to protein family HMM PF00004. (553 aa)    
Predicted Functional Partners:
PRU_0335
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF08238.
 
 0.849
PRU_0336
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF08238.
 
 0.492
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.478
PRU_2120
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
 0.476
PRU_0954
Hypothetical protein; Identified by glimmer; putative.
   
 0.470
PRU_0345
Conserved hypothetical protein; Identified by similarity to PIR:B83074; match to protein family HMM PF08719; match to protein family HMM TIGR02464.
 
 
 
 0.454
PRU_0373
Haloacid dehalogenase-like hydrolase domain protein; Identified by match to protein family HMM PF00702.
     
 0.443
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.406
PRU_0608
Protein phosphatase 1; Identified by similarity to GB:AAF81068.1; match to protein family HMM PF00481.
  
 
 0.400
htpG
Chaperone protein HtpG; Identified by similarity to GB:AAD51118.1; match to protein family HMM PF00183; match to protein family HMM PF02518.
   
 0.400
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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