Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PRU_0422Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. (224 aa)    
Predicted Functional Partners:
PRU_0421
Putative L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596.
  
    0.807
PRU_0423
Transporter, SSS family; Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.772
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.696
PRU_0419
Carbohydrate kinase domain protein; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.
  
    0.659
PRU_0418
alpha-N-arabinofuranosidase; Identified by similarity to GB:AAN05450.1; match to protein family HMM PF06964.
  
    0.633
galM_1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.565
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.414
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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