STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_0441Putative membrane protein. (381 aa)    
Predicted Functional Partners:
PRU_0442
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.773
PRU_0443
Putative wbuN protein; Identified by similarity to GB:AAT77178.1.
       0.773
PRU_0444
Putative wbuO protein; Identified by similarity to GB:AAT77179.1.
       0.773
PRU_0434
Glucose-1-phosphate cytidylyltransferase; Identified by similarity to GB:AAA27631.1; match to protein family HMM TIGR02623.
       0.693
PRU_0435
CDP-D-glucose-4,6-dehydratase; Identified by similarity to GB:AAA88700.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622.
       0.693
PRU_0436
Nucleoside diphosphate sugar epimerase family protein; Identified by match to protein family HMM PF01370.
       0.693
rfbC_2
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
       0.693
PRU_0438
Conserved hypothetical protein; Identified by similarity to GB:BAC09938.1.
       0.693
PRU_0439
Putative membrane protein; Identified by similarity to GB:CAG37943.1; match to protein family HMM PF01943.
       0.693
PRU_0440
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
       0.693
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.