STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0451Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (374 aa)    
Predicted Functional Partners:
PRU_0450
Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
   
 0.854
PRU_0452
Putative polysaccharide biosynthesis protein; Identified by similarity to SP:Q8X7P7; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
  
  
 0.782
PRU_1757
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
     0.683
PRU_1525
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
  
     0.674
PRU_0442
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.672
PRU_1530
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
     0.672
PRU_0446
Sugar isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.
  
 
 0.666
PRU_0449
Conserved domain protein; Identified by similarity to GB:AAO58965.1.
     
 0.645
PRU_0447
Conserved hypothetical protein; Identified by match to protein family HMM PF02348.
     
 0.639
kdsA_1
3-deoxy-8-phosphooctulonate synthase; Identified by similarity to SP:Q46225; match to protein family HMM PF00793; match to protein family HMM TIGR01362; Belongs to the KdsA family.
     
 0.629
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.