STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0465Glycosyl hydrolase, family 51; Identified by match to protein family HMM PF02018. (833 aa)    
Predicted Functional Partners:
PRU_0418
alpha-N-arabinofuranosidase; Identified by similarity to GB:AAN05450.1; match to protein family HMM PF06964.
  
  
 
0.929
PRU_1622
Putative alpha-N-arabinofuranosidase; Identified by similarity to SP:P82593; match to protein family HMM PF02018; match to protein family HMM PF06964.
  
  
 
0.929
PRU_2744
Glycosyl hydrolase, family 43/carbohydrate binding module, family 6 domain protein; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
 
 0.920
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.859
PRU_2313
Glycosyl hydrolase, family 2; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.830
uxaC
Glucuronate isomerase; Identified by match to protein family HMM PF02614.
   
 
 0.815
PRU_2701
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.666
PRU_0271
Conserved hypothetical protein; Identified by similarity to GB:BAB49423.1; match to protein family HMM PF07944.
 
   
 0.640
PRU_0268
Conserved hypothetical protein; Identified by similarity to GB:AAO78779.1; match to protein family HMM PF00754; match to protein family HMM PF07944.
 
   
 0.629
msrA
methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.565
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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