STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
PRU_0474Putative two-component regulator; Identified by match to protein family HMM PF07494; match to protein family HMM PF07495. (816 aa)    
Predicted Functional Partners:
PRU_2436
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF07494; match to protein family HMM PF07495.
  
     0.760
PRU_0473
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
  
 0.638
PRU_0472
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
  
 
 0.581
PRU_2308
Putative glycosyl hydrolase.
  
   
 0.579
PRU_2517
TonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
   
 0.496
axe1-6A
Putative acetylxylan esterase/endo-1,4-beta-xylanase; Involved in degradation of plant cell wall polysaccharides. Bifunctional esterase that possesses both acetyl esterase and ferulic acid esterase activities. Has deacetylase activity towards acetylated xylo-oligosaccharides smaller than xylo-heptaose, as well as from glucose-pentaacetate. Is also able to release ferulic acid from methylferulate, and from the more natural substrates wheat bran, corn fiber, and XOS(FA,Ac), a corn fiber-derived substrate enriched in O- acetyl and ferulic acid esters; In the N-terminal section; belongs to [...]
 
   
 0.494
PRU_2716
DNA-binding sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07495.
 
 
 0.469
PRU_2518
Putative lipoprotein.
  
   
 0.463
PRU_2156
Conserved hypothetical protein; Identified by similarity to GB:AAO78428.1.
 
     0.458
PRU_0458
Conserved hypothetical protein; Identified by similarity to GB:AAO76548.1.
  
     0.453
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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