STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0504Cupin domain protein; Identified by similarity to GB:AAM06972.1; match to protein family HMM PF07883. (131 aa)    
Predicted Functional Partners:
PRU_0505
Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.
       0.773
PRU_1801
Hypothetical protein; Identified by glimmer; putative.
  
     0.633
PRU_1802
Nucleotidyl transferase family protein; Identified by similarity to GB:AAA27631.1.
  
     0.630
PRU_0384
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
  
     0.616
PRU_2411
Hypothetical protein; Identified by glimmer; putative.
  
     0.559
PRU_1339
Conserved hypothetical protein; Identified by similarity to GB:BAD48329.1.
  
     0.532
PRU_0506
Putative nitroimidazole resistance protein; Identified by similarity to GB:CAA50581.1; match to protein family HMM PF01243.
 
     0.508
PRU_0503
Transcriptional regulator; Identified by match to protein family HMM PF01638.
 
    0.487
PRU_1799
HAD-superfamily hydrolase, subfamily IA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.
  
     0.432
PRU_1800
Conserved hypothetical protein; Identified by similarity to GB:AAQ67031.1.
  
    0.403
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.