Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
PRU_0601Conserved domain protein; Identified by similarity to PIR:JH0205. (209 aa)    
Predicted Functional Partners:
PRU_0602
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.773
pepO_1
Endopeptidase PepO; Identified by similarity to GB:BAA24495.1; match to protein family HMM PF01431; match to protein family HMM PF05649.
       0.741
PRU_0600
S1 RNA binding domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM PF09371.
       0.551
PRU_0604
Conserved domain protein; Identified by similarity to SP:Q9GKS9.
       0.485
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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