STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0606ATPase, AAA family; Identified by match to protein family HMM PF00004. (1063 aa)    
Predicted Functional Partners:
PRU_0335
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF08238.
  
 0.770
PRU_0605
Protein kinase domain protein.
 
     0.628
PRU_0345
Conserved hypothetical protein; Identified by similarity to PIR:B83074; match to protein family HMM PF08719; match to protein family HMM TIGR02464.
 
 
 
 0.610
PRU_0607
Putative regulatory protein; Identified by match to protein family HMM PF00498.
   
   0.536
PRU_0604
Conserved domain protein; Identified by similarity to SP:Q9GKS9.
 
     0.532
PRU_0608
Protein phosphatase 1; Identified by similarity to GB:AAF81068.1; match to protein family HMM PF00481.
  
   0.495
PRU_0954
Hypothetical protein; Identified by glimmer; putative.
   
 0.476
PRU_0382
Conserved hypothetical protein; Identified by similarity to GB:AAP16260.1.
   
 
 0.425
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.416
PRU_0610
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
       0.416
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.