STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0692Glycosyl hydrolase, family 2; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family. (761 aa)    
Predicted Functional Partners:
lacZ
Beta-galactosidase; Identified by similarity to SP:P00722; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
 
  
 
0.941
PRU_2514
Putative alpha-galactosidase; Identified by similarity to GB:AAD23585.1; match to protein family HMM PF02065.
 
 
 0.923
PRU_1156
Glycosyl hydrolase, family 20; Identified by match to protein family HMM PF00728.
  
 0.915
PRU_1157
beta-N-acetylhexosaminidase; Identified by similarity to SP:P49008; match to protein family HMM PF00728; match to protein family HMM PF07691.
  
 0.915
galM_1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.909
galM_2
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.909
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
 0.900
PRU_1568
Glycosyl hydrolase, family 35; Identified by match to protein family HMM PF01301; Belongs to the glycosyl hydrolase 35 family.
 
 0.797
PRU_0082
Putative beta-galactosidase; Identified by similarity to SP:P48982; match to protein family HMM PF01301; match to protein family HMM PF02449.
 
 0.770
PRU_1522
Beta-galactosidase; Identified by similarity to SP:Q56307; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
  
  
 
0.754
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.