STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ubiEUbiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (243 aa)    
Predicted Functional Partners:
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
  
 0.931
PRU_0721
Shikimate dehydrogenase; Identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM PF08501.
  
  
 0.842
PRU_0720
Putative phosphoribosylformylglycinamidine cyclo-ligase; Identified by similarity to SP:Q05728; match to protein family HMM PF02769.
     
 0.820
purC
Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Identified by match to protein family HMM PF01259; Belongs to the SAICAR synthetase family.
       0.765
PRU_0724
Identified by match to protein family HMM PF02562.
       0.699
PRU_2484
Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
 
 
 0.691
PRU_0725
Conserved hypothetical protein; Identified by similarity to GB:AAO79324.1.
       0.586
idsA
Short chain isoprenyl diphosphate synthase; Identified by similarity to SP:Q53479; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
 
 
 0.519
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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