Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PRU_0741Dipeptidase; Identified by match to protein family HMM PF03577. (574 aa)    
Predicted Functional Partners:
nadC
Nicotinate-nucleotide diphosphorylase (carboxylating); Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family.
       0.792
PRU_0742
HAD-superfamily hydrolase, subfamily IA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.
  
    0.775
PRU_1446
MFS transporter; Identified by match to protein family HMM PF07690.
  
     0.622
PRU_0738
Putative carbon starvation protein A; Identified by similarity to SP:P15078; match to protein family HMM PF02554.
       0.590
PRU_0739
Conserved hypothetical protein; Identified by similarity to GB:AAO76847.1.
       0.590
PRU_0556
Peptidase, C1 (papain) family; Identified by similarity to GB:AAA25250.1; match to protein family HMM PF03051; Belongs to the peptidase C1 family.
 
   
 0.582
PRU_2390
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.524
PRU_1443
Peptidase, S9C (acylaminoacyl-peptidase) subfamily; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.
 
     0.520
PRU_0743
Putative lipoprotein.
       0.507
hprA
Glycerate dehydrogenase (NADH-dependent); Identified by similarity to SP:Q59516; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
  
 0.499
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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