STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_0761Putative BatD/BatE protein; Identified by similarity to GB:AAD30862.1; similarity to GB:AAQ66615.1; match to protein family HMM PF00515; match to protein family HMM PF07719. (853 aa)    
Predicted Functional Partners:
PRU_0759
Putative BatA protein; Identified by similarity to GB:AAD30858.1; match to protein family HMM PF00092.
 
  
 0.959
PRU_0757
Conserved hypothetical protein; Identified by similarity to GB:AAQ66610.1; match to protein family HMM PF01882.
 
  
 0.958
PRU_0760
Putative BatB/BatC protein; Identified by similarity to GB:AAD30859.1; match to protein family HMM PF00092; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.958
PRU_0758
Conserved hypothetical protein; Identified by similarity to GB:AAO76015.1.
 
   
 0.956
PRU_0756
Conserved hypothetical protein; Identified by similarity to GB:AAO76017.1; match to protein family HMM PF07726; match to protein family HMM PF07728.
 
   
 0.840
PRU_0763
Putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
    0.828
PRU_0762
PAP2 domain protein; Identified by match to protein family HMM PF01569.
       0.824
PRU_2555
Putative lipoprotein; Identified by similarity to GB:AAO78447.1.
  
     0.505
PRU_1820
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
   
 0.493
PRU_0859
Peptidyl-prolyl cis-trans isomerase-like protein; Identified by similarity to GB:AAO79476.1.
 
 
   0.476
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.