STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0764Putative lipoprotein; Identified by similarity to GB:AAQ65727.1; match to protein family HMM PF03938. (211 aa)    
Predicted Functional Partners:
PRU_0765
Conserved hypothetical protein; Identified by similarity to GB:AAO76721.1.
       0.739
PRU_2497
Conserved hypothetical protein; Identified by similarity to GB:AAO78746.1.
 
     0.706
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.629
PRU_0907
Conserved hypothetical protein; Identified by similarity to GB:AAQ66659.1; match to protein family HMM PF03548.
  
  
 0.620
PRU_1259
Conserved hypothetical protein; Identified by similarity to GB:AAQ66448.1.
 
     0.618
pepD_1
Xaa-His dipeptidase; Identified by similarity to SP:P15288; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893.
       0.615
PRU_0767
Putative lipoprotein.
       0.615
PRU_2899
Conserved hypothetical protein; Identified by similarity to GB:AAQ66950.1.
 
     0.578
PRU_1826
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.571
PRU_2281
Conserved hypothetical protein; Identified by similarity to GB:AAQ65423.1.
 
 
 
 0.534
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.