Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0771Hypothetical protein; Identified by glimmer; putative. (221 aa)    
Predicted Functional Partners:
PRU_0923
Hypothetical protein; Identified by glimmer; putative.
  
     0.707
PRU_2801
Conserved hypothetical protein; Identified by similarity to GB:AAO77587.1.
  
     0.702
PRU_2800
Putative lipoprotein; Identified by similarity to SP:P12608; match to protein family HMM PF09375.
  
     0.690
PRU_0944
Hypothetical protein; Identified by glimmer; putative.
  
     0.689
PRU_0971
Conserved hypothetical protein; Identified by similarity to GB:CAG73253.1; match to protein family HMM PF05728.
 
     0.674
PRU_0934
Prophage PRU01, putative transcriptional regulator.
  
     0.665
PRU_0913
Prophage PRU01, tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
  
     0.660
PRU_2023
Conserved hypothetical protein; Identified by similarity to GB:AAR97702.1.
  
     0.658
PRU_2805
Conserved domain protein; Identified by similarity to GB:CAG36739.1.
  
     0.658
PRU_2799
Conserved domain protein; Identified by similarity to GB:CAE78545.1.
  
     0.642
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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