STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0777Conserved domain protein; Identified by similarity to GB:AAM32675.1; match to protein family HMM PF06250. (147 aa)    
Predicted Functional Partners:
PRU_2822
Conserved hypothetical protein; Identified by similarity to GB:AAL29908.1; match to protein family HMM PF06250.
  
     0.774
PRU_2888
Conserved hypothetical protein; Identified by similarity to GB:AAO77246.1; match to protein family HMM PF06250.
  
     0.774
PRU_0323
Conserved hypothetical protein; Identified by similarity to GB:AAM06526.1.
  
     0.520
PRU_1009
Divergent AAA domain protein; Identified by match to protein family HMM PF04326; match to protein family HMM PF08279.
 
     0.483
PRU_1058
Divergent AAA domain protein; Identified by match to protein family HMM PF04326.
 
     0.473
PRU_2410
Conserved hypothetical protein; Identified by similarity to GB:AAO91005.1.
  
     0.436
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.