STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0785Hypothetical protein; Identified by glimmer; putative. (698 aa)    
Predicted Functional Partners:
PRU_2805
Conserved domain protein; Identified by similarity to GB:CAG36739.1.
 
     0.728
PRU_0971
Conserved hypothetical protein; Identified by similarity to GB:CAG73253.1; match to protein family HMM PF05728.
  
     0.720
PRU_0908
Prophage PRU01, putative membrane protein; Identified by similarity to GB:AAO79424.1.
  
     0.660
PRU_1265
Conserved hypothetical protein; Identified by similarity to GB:BAD50015.1; match to protein family HMM PF07396.
  
     0.610
PRU_0771
Hypothetical protein; Identified by glimmer; putative.
  
     0.591
PRU_2574
Conserved domain protein; Identified by similarity to GB:AAO76901.1; match to protein family HMM PF04397.
  
     0.559
PRU_2841
Identified by match to protein family HMM PF04909.
  
     0.527
PRU_1889
Conserved domain protein.
  
     0.524
PRU_2799
Conserved domain protein; Identified by similarity to GB:CAE78545.1.
  
     0.497
PRU_2801
Conserved hypothetical protein; Identified by similarity to GB:AAO77587.1.
  
     0.496
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.