STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0786Conserved hypothetical protein; Identified by similarity to GB:AAT89226.1. (270 aa)    
Predicted Functional Partners:
PRU_0787
Conserved hypothetical protein; Identified by similarity to SP:Q8AB57; match to protein family HMM PF08497.
       0.824
PRU_0788
Conserved hypothetical protein; Identified by similarity to GB:AAO75363.1.
       0.768
PRU_0790
Identified by match to protein family HMM PF01553.
  
  
 0.725
PRU_0789
Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF00041.
     
 0.709
PRU_0791
Conserved hypothetical protein; Identified by similarity to GB:AAO75368.1.
       0.690
PRU_0923
Hypothetical protein; Identified by glimmer; putative.
  
     0.622
PRU_0913
Prophage PRU01, tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
 
    0.607
PRU_1299
Conserved domain protein; Identified by similarity to SP:Q8R9T6.
  
    0.582
PRU_0944
Hypothetical protein; Identified by glimmer; putative.
  
     0.572
PRU_0953
Putative Clp protease; Identified by match to protein family HMM PF00574.
 
     0.571
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.