STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0790Identified by match to protein family HMM PF01553. (190 aa)    
Predicted Functional Partners:
PRU_0789
Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF00041.
       0.824
PRU_0791
Conserved hypothetical protein; Identified by similarity to GB:AAO75368.1.
       0.813
PRU_0788
Conserved hypothetical protein; Identified by similarity to GB:AAO75363.1.
       0.799
PRU_0787
Conserved hypothetical protein; Identified by similarity to SP:Q8AB57; match to protein family HMM PF08497.
       0.746
PRU_0786
Conserved hypothetical protein; Identified by similarity to GB:AAT89226.1.
  
  
 0.725
pfp
Diphosphate--fructose-6-phosphate 1-phosphotransferase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.
  
  
 0.637
PRU_2213
Conserved hypothetical protein; Identified by similarity to GB:CAG37251.1.
 
 
 0.443
PRU_0793
Glycosyl hydrolase, family 25 protein; Identified by match to protein family HMM PF01183.
       0.437
PRU_0411
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
   
 0.419
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.