STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0835Conserved hypothetical protein; Identified by similarity to GB:AAO76466.1. (553 aa)    
Predicted Functional Partners:
PRU_0631
Conserved hypothetical protein; Identified by similarity to GB:AAO79291.1.
  
     0.740
PRU_2755
Conserved hypothetical protein; Identified by match to protein family HMM PF01569.
  
     0.693
PRU_2619
Conserved hypothetical protein; Identified by similarity to GB:AAO78503.1.
 
     0.692
PRU_1265
Conserved hypothetical protein; Identified by similarity to GB:BAD50015.1; match to protein family HMM PF07396.
  
     0.677
PRU_1111
Conserved hypothetical protein; Identified by similarity to GB:AAO78246.1.
  
    0.660
PRU_0299
Conserved hypothetical protein; Identified by similarity to GB:AAO78911.1.
  
     0.659
PRU_2901
Putative membrane protein; Identified by similarity to GB:AAO78496.1; match to protein family HMM PF04138.
  
     0.650
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
  
 0.612
PRU_2879
Conserved hypothetical protein.
  
     0.604
PRU_1791
Conserved domain protein; Identified by similarity to PIR:S75061.
  
     0.602
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.