Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PRU_0871Sensor histidine kinase; Identified by match to protein family HMM PF02518. (1059 aa)    
Predicted Functional Partners:
PRU_0870
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.960
PRU_0869
Putative membrane protein.
  
    0.825
PRU_0814
Conserved domain protein; Identified by similarity to GB:AAQ66446.1; match to protein family HMM PF07719.
  
 
   0.775
PRU_1072
Conserved hypothetical protein; Identified by similarity to GB:AAO76007.1.
  
     0.760
PRU_0859
Peptidyl-prolyl cis-trans isomerase-like protein; Identified by similarity to GB:AAO79476.1.
  
 
 
 0.744
PRU_0458
Conserved hypothetical protein; Identified by similarity to GB:AAO76548.1.
  
     0.732
PRU_1208
Conserved hypothetical protein; Identified by similarity to GB:AAO76791.1.
  
     0.729
PRU_1608
Conserved hypothetical protein; Identified by similarity to GB:AAO75722.1.
  
     0.727
PRU_1514
Conserved hypothetical protein; Identified by similarity to GB:AAO76781.1; match to protein family HMM PF07396.
  
     0.721
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
  
   
 0.685
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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