Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
gene fusions
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PRU_0873Putative 2-dehydro-3-deoxygluconokinase; Identified by match to protein family HMM PF00294. (340 aa)    
Predicted Functional Partners:
PRU_0872
Putative 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Identified by similarity to SP:P10177; match to protein family HMM PF01081.
 
 
 0.994
uxaA
Altronate dehydratase; Identified by similarity to SP:P42604; match to protein family HMM PF04295; match to protein family HMM PF08666.
 
 
 0.914
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.864
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.847
PRU_0870
Response regulator; Identified by match to protein family HMM PF00072.
     
 0.633
PRU_0869
Putative membrane protein.
       0.623
PRU_0874
Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
  
 0.569
PRU_0871
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
  
    0.496
PRU_0877
Hypothetical protein; Identified by glimmer; putative.
       0.482
PRU_0876
Sodium transporter, NhaC sodium:hydrogen antiporter (NhaC) family; Identified by match to protein family HMM PF03553; match to protein family HMM PF06808.
     
 0.480
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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