STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0874Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (355 aa)    
Predicted Functional Partners:
uxaA
Altronate dehydratase; Identified by similarity to SP:P42604; match to protein family HMM PF04295; match to protein family HMM PF08666.
     
 0.774
PRU_0876
Sodium transporter, NhaC sodium:hydrogen antiporter (NhaC) family; Identified by match to protein family HMM PF03553; match to protein family HMM PF06808.
       0.763
PRU_0877
Hypothetical protein; Identified by glimmer; putative.
       0.763
PRU_2666
Transcriptional regulator, lacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
     0.760
PRU_2764
Putative transcriptional regulator; Identified by match to protein family HMM PF00532.
  
     0.754
gltA_2
Glutamate synthase (NADPH), large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
 
 0.752
PRU_0871
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
 
   
 0.612
PRU_0457
Oxidoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.600
PRU_0870
Response regulator; Identified by match to protein family HMM PF00072.
 
  
 0.569
PRU_0873
Putative 2-dehydro-3-deoxygluconokinase; Identified by match to protein family HMM PF00294.
  
  
 0.569
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.