STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0879Putative lipoprotein; Identified by similarity to GB:BAD49490.1. (421 aa)    
Predicted Functional Partners:
PRU_1011
Putative lipoprotein.
  
     0.761
PRU_2777
Hypothetical protein; Identified by glimmer; putative.
  
     0.675
PRU_2237
PASTA domain protein; Identified by match to protein family HMM PF03793.
   
 
 0.624
PRU_1841
Conserved hypothetical protein; Identified by similarity to GB:AAF74728.1.
  
     0.585
PRU_1585
Conserved hypothetical protein; Identified by similarity to GB:AAO79338.1.
 
     0.575
PRU_1344
Conserved hypothetical protein; Identified by similarity to GB:AAK02835.1.
 
     0.549
PRU_0107
Conserved domain protein; Identified by similarity to GB:BAD49541.1.
  
     0.545
PRU_0299
Conserved hypothetical protein; Identified by similarity to GB:AAO78911.1.
  
     0.541
PRU_0878
Glycosyl hydrolase, family 25 protein; Identified by match to protein family HMM PF01183.
       0.533
PRU_1586
Conserved hypothetical protein; Identified by similarity to GB:AAQ67085.1.
 
     0.487
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.