Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0907Conserved hypothetical protein; Identified by similarity to GB:AAQ66659.1; match to protein family HMM PF03548. (198 aa)    
Predicted Functional Partners:
PRU_2918
Putative lipoprotein.
  
 
 
 0.866
PRU_0906
Prophage PRU01, FtsK/SpoIIIE family protein; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397.
  
  
 0.854
PRU_0908
Prophage PRU01, putative membrane protein; Identified by similarity to GB:AAO79424.1.
       0.792
PRU_0905
3'-5' exonuclease; Identified by match to protein family HMM PF01612.
 
    0.720
PRU_0861
Conserved hypothetical protein; Identified by similarity to GB:AAO79474.1; match to protein family HMM PF06835.
 
  
 0.714
PRU_2281
Conserved hypothetical protein; Identified by similarity to GB:AAQ65423.1.
  
  
 0.698
PRU_1251
Conserved hypothetical protein; Identified by similarity to GB:AAQ67053.1.
  
   
 0.684
PRU_1273
Identified by match to protein family HMM PF00691; match to protein family HMM PF07676.
 
 
 0.676
PRU_2174
Conserved domain protein; Identified by similarity to GB:AAH55225.1; match to protein family HMM TIGR03513.
  
     0.659
PRU_2899
Conserved hypothetical protein; Identified by similarity to GB:AAQ66950.1.
 
     0.655
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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