STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0908Prophage PRU01, putative membrane protein; Identified by similarity to GB:AAO79424.1. (494 aa)    
Predicted Functional Partners:
PRU_0866
Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.802
PRU_0906
Prophage PRU01, FtsK/SpoIIIE family protein; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397.
       0.792
PRU_0907
Conserved hypothetical protein; Identified by similarity to GB:AAQ66659.1; match to protein family HMM PF03548.
       0.792
PRU_1208
Conserved hypothetical protein; Identified by similarity to GB:AAO76791.1.
  
     0.769
PRU_2853
Conserved hypothetical protein; Identified by similarity to GB:AAO79849.1; match to protein family HMM PF00328.
  
     0.744
PRU_1962
Hypothetical protein; Identified by glimmer; putative.
  
     0.743
PRU_2841
Identified by match to protein family HMM PF04909.
  
     0.742
PRU_0222
Histidine acid phosphatase family protein; Identified by match to protein family HMM PF00328.
  
     0.730
PRU_2549
Conserved hypothetical protein; Identified by similarity to GB:AAO79849.1; match to protein family HMM PF00328.
  
     0.730
PRU_2614
Conserved hypothetical protein; Identified by similarity to GB:AAO79849.1; match to protein family HMM PF00328.
  
     0.717
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.