STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0934Prophage PRU01, putative transcriptional regulator. (352 aa)    
Predicted Functional Partners:
PRU_0771
Hypothetical protein; Identified by glimmer; putative.
  
     0.665
PRU_1680
Conserved hypothetical protein; Identified by similarity to GB:BAD47496.1.
  
     0.654
PRU_2765
Conserved hypothetical protein; Identified by similarity to GB:AAO75396.1.
  
     0.644
PRU_2122
Conserved hypothetical protein; Identified by similarity to GB:AAO75181.1.
  
   
 0.610
PRU_0506
Putative nitroimidazole resistance protein; Identified by similarity to GB:CAA50581.1; match to protein family HMM PF01243.
  
     0.535
PRU_2124
Conserved hypothetical protein; Identified by similarity to GB:AAO75165.1.
  
     0.531
PRU_0913
Prophage PRU01, tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
  
 
 0.517
PRU_0935
Conserved domain protein.
  
    0.513
PRU_1052
Conserved hypothetical protein; Identified by similarity to GB:BAC70637.1.
 
 
 
 0.511
PRU_2589
Conserved hypothetical protein.
  
     0.500
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.