STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRU_0937Prophage PRU01, putative type II restriction endonuclease; Identified by similarity to SP:O68584. (315 aa)    
Predicted Functional Partners:
PRU_0938
Prophage PRU01, DNA methylase, C-5 cytosine-specific family; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675.
     0.968
PRU_0939
Prophage PRU01, putative type II restriction endonuclease; Identified by similarity to SP:P24617.
       0.773
PRU_2360
Putative membrane protein.
  
     0.589
PRU_2904
Putative membrane protein; Identified by similarity to GB:AAO76859.1.
  
     0.584
PRU_0361
DNA methylase, C-5 cytosine-specific family; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; overlaps another CDS with the same product name.
     0.498
PRU_0817
STAS domain protein; Identified by match to protein family HMM PF01740.
  
     0.495
PRU_2589
Conserved hypothetical protein.
  
     0.483
PRU_0362
DNA methylase, C-5 cytosine-specific family; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; overlaps another CDS with the same product name; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.477
PRU_1299
Conserved domain protein; Identified by similarity to SP:Q8R9T6.
  
     0.460
PRU_0666
DNA methylase, C-5 cytosine-specific family; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675.
 
     0.451
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.